PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00301
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 353aa    MW: 37362.5 Da    PI: 9.7668
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00301genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.8e-3769149281
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  
  AA21G00301  69 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIP 149
                 57999***********************************************************88888444211111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3074151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32775129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MATIQKKQED EGTRLVDPSI INGVRSVESS HRFEVNLEPK TEPSSLETMI QIPSISMSLA  60
PPSSTVLPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE  120
NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDLGE NPMKKRRKRP SNSEYIDIND  180
AVSASSGLAP ISTVTTQPLQ APNPSSAMAQ GMIPMWAIPS NAMIPAVGAF FLVPHVTGPS  240
NQPQLLAFPA SAAAAPTGTL VNISNGPMSS YVAAVQQATA MARPLQVADQ SSSGGLISAS  300
NVTCSNLSKT ASVMAPSSSS GLTTTSHTVR DFSLEIYNKQ ELQFMTTTQS SKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00301
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885215.11e-163transcription factor TCP9
SwissprotO646471e-148TCP9_ARATH; Transcription factor TCP9
TrEMBLD7LD721e-162D7LD72_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2764__AT2G45680.11e-163(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-149TCP family protein