PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00298
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 143aa    MW: 16729.2 Da    PI: 10.4193
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00298genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.92.3e-321059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rienk+nrqvtfskRrng+lKKA+ELSvLCd+eva+iifss+gklye+s+
  AA21G00298 10 RIENKINRQVTFSKRRNGLLKKAYELSVLCDVEVALIIFSSRGKLYEFSN 59
                8***********************************************95 PP
2K-box66.68.3e-2379141669
       K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 ++   e  +++++qe+++Lk+++e+L r++R+llGedL+++slkeLq +e+qLe++l+  R++K
  AA21G00298  79 TN-RLEDSTQNWSQEVTRLKSKYESLVRTNRNLLGEDLGEMSLKELQMVEKQLETALTATRNRK 141
                 33.445559******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.067161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-33290IPR002100Transcription factor, MADS-box
CDDcd002653.16E-42278No hitNo description
PRINTSPR004041.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1883141IPR002487Transcription factor, K-box
PROSITE profilePS5129710.8986143IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGRGKVEVRR IENKINRQVT FSKRRNGLLK KAYELSVLCD VEVALIIFSS RGKLYEFSNL  60
GIARTIERYQ RCHNYSKDTN RLEDSTQNWS QEVTRLKSKY ESLVRTNRNL LGEDLGEMSL  120
KELQMVEKQL ETALTATRNR KVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21169169MEF2 CHIMERA
6byy_B2e-21169169MEF2 CHIMERA
6byy_C2e-21169169MEF2 CHIMERA
6byy_D2e-21169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397743.16e-78agamous-like MADS-box protein AGL6
SwissprotP293868e-77AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLA0A087H5F24e-77A0A087H5F2_ARAAL; Uncharacterized protein
STRINGA0A087H5F26e-78(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-79AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]