PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA21G00280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22887.1 Da PI: 7.5043 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.2 | 1.2e-37 | 21 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+k+C++apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+ +l++eA ar++dPvyG++g++++lq+q+++l+aela+++ AA21G00280 21 PCGACKFLRRKCVKGCIFAPYFDAEQgTSRFAAVHKVFGASNASKMLMRLPLNKRGDAVVTLCFEALARLHDPVYGSLGHLFSLQHQVMNLQAELAHVQ 119 7***********************9989********************************************************************999 PP DUF260 99 ee 100 ++ AA21G00280 120 AR 121 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.914 | 20 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-37 | 21 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MMMTGNLIGD GGRNGGGGGG PCGACKFLRR KCVKGCIFAP YFDAEQGTSR FAAVHKVFGA 60 SNASKMLMRL PLNKRGDAVV TLCFEALARL HDPVYGSLGH LFSLQHQVMN LQAELAHVQA 120 RLSTIQHLPL NQTQPQTSSN LRWGSPLTDM VNNNNNNNNN SNSIELEPMS SNLDKLWEEE 180 GVVEDGELQE LAMQFVSKYL PSLKHQPCT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 17 | 119 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 17 | 119 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 18 | GGRNGGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA21G00280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506483.1 | 6e-83 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 4e-81 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A178VSY1 | 1e-78 | A0A178VSY1_ARATH; LBD19 | ||||
STRING | XP_010506483.1 | 2e-82 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-80 | LOB domain-containing protein 19 |