PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00256
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 286aa    MW: 33351.2 Da    PI: 6.0285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00256genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC  C ksF +   L  H+r+H
  AA21G00256  4 YKCRFCLKSFINGRALGGHMRSH 26
                9*********************9 PP
2zf-C2H215.64.7e-05181203123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ Cgk+F++   L  H  +H
  AA21G00256 181 FKCETCGKVFKSYQALGGHRASH 203
                 89***********9999998887 PP
3zf-C2H212.40.00049232254123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++Fs+   L  H r+H
  AA21G00256 232 HECPICLRVFSSGQALGGHKRSH 254
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.0E-9326No hitNo description
SMARTSM003550.033426IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-5427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.0E-9176203No hitNo description
PfamPF139121.8E-11180205IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-4181209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.323181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM003550.15232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224232254IPR007087Zinc finger, C2H2
PfamPF139123.0E-12232254IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEKYKCRFCL KSFINGRALG GHMRSHMLNL SSKHELYDFT LEEEEEEERP SQLSDEYTES  60
DASSSDDEDQ DQDHENVNEF YTLRDNNLKR SHEFDYESET ESLKINTTRR RSKRTRKLGS  120
FDVTESVTEF EPLSSISDTT TEEDLAVCLI MLSRDNKWQK DNQFEEFNNK LIKNRRKQGR  180
FKCETCGKVF KSYQALGGHR ASHKKNKLFV TKTEKKQENE ERFDLDEVKK LHECPICLRV  240
FSSGQALGGH KRSHGIAVNS VKLNQKMIDL NLPAPIEEDE VISVVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177KNRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474803.14e-93PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9M2024e-85ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLD7LBV66e-91D7LBV6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2705__AT2G45120.19e-92(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-80C2H2-like zinc finger protein