PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA21G00251

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

GATA

Protein Properties

Length: 274aa MW: 30678 Da PI: 8.5459

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA21G00251	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.2	4.8e-18	183	217	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l AA21G00251 183 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 217 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	6.5E-88	2	273	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	1.3E-15	177	227	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.227	181	213	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.6E-13	181	215	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	2.61E-14	181	241	No hit	No description
CDD	cd00202	5.67E-14	182	229	No hit	No description
Pfam	PF00320	7.7E-16	183	217	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	183	208	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDLYGLSSPD LLRIDDLLDF SNEDLFSSSS TSTAATSSSS FPPPDHHHHH HHHHHHNPNF 60 HISPNSFIHD ICVPSDDAAH LEWLSQFVDD SFADFPANPL NGGGGNNNMV SVKQETTSFH 120 GKPRSKRSRA PAAFAGPWAP IQESDQQIAK FKPKKEQQQQ GRQQQSPAIN PATGAGEGVM 180 RRCTHCASEK TPQWRTGPLG PKTLCNACGV RFKSGRLVPE YRPASSPTFV LTQHSNSHRK 240 VMELRRQKEV MRTPQQQQGQ IQIHHHHNHH HSPF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA21G00251

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493590	1e-72	AB493590.1 Arabidopsis thaliana At2g45050 mRNA for hypothetical protein, partial cds, clone: RAAt2g45050.
GenBank	AK317134	1e-72	AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19.
GenBank	AY080745	1e-72	AY080745.1 Arabidopsis thaliana At2g45050 mRNA sequence.
GenBank	BT000921	1e-72	BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds.
GenBank	CP002685	1e-72	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	Y13649	1e-72	Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397685.1	1e-119	GATA transcription factor 2
Swissprot	O49741	1e-107	GATA2_ARATH; GATA transcription factor 2
TrEMBL	V4LH94	1e-117	V4LH94_EUTSA; GATA transcription factor
STRING	XP_006397685.1	1e-118	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3203	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	3e-95	GATA transcription factor 2

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]