PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00055
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 273aa    MW: 30885.8 Da    PI: 8.7938
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00055genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-3165118255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+
  AA21G00055  65 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 118
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.82161121IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2861119IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2265120IPR006447Myb domain, plants
SuperFamilySSF466898.06E-1465119IPR009057Homeodomain-like
PfamPF002492.5E-966117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MADAARDRAG TCSPRKCWSW LDLNREEGSS SVEDEDDESN LSSSCNDKEK NGNNPVRQYV  60
RSNMPRLRWT PDLHLSFVRA VQRLGGPHRA TPKLVLQMMN LKGLSIAHVK SHLQMYRSKK  120
LEPSGHEVGG EQRSYLLDMI DSRCIPYGDL RHVYTLKTVP SRLLFEPQSG GSSLLKSSGL  180
CSRWYGVQGG REEDKTESKT LPLLEVAQIR KTTHEKRSRD EQTAHVFEEG TVKRSKIMSR  240
DGDQLPEFGQ NLSQAPESCR RKAVDDINTM LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881865.15e-92two-component response regulator ORR24
TrEMBLD7LIV01e-90D7LIV0_ARALL; Myb family transcription factor
STRINGfgenesh1_pm.C_scaffold_40020022e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.12e-87G2-like family protein