PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA20G00095

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 781aa MW: 87330.4 Da PI: 7.3916

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA20G00095	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.7	2e-27	501	552	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aekei+++ l+++F++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ AA20G00095 501 AEKEITIDILRQHFAGNLKDAAKSIGVCPTTLKRICRQHGILRWPSRKIKKV 552 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	2.69E-5	311	401	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.665	488	572	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-24	505	552	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.4E-20	689	772	No hit	No description
SuperFamily	SSF54277	3.08E-19	690	776	No hit	No description
SMART	SM00666	1.8E-23	691	776	IPR000270	PB1 domain
PROSITE profile	PS51745	22.145	691	776	IPR000270	PB1 domain
CDD	cd06407	1.53E-37	692	773	No hit	No description
Pfam	PF00564	2.5E-18	692	773	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MEEADNNSSV LDFHDYLMDQ LLSEECLVET TQPDSDPFAS PSLSCILSDP PCSHQEEEHV 60 TSTYSSSASG LLSVKERLMC AMGYLQELMG ERELLIQLWV PIERGSRRVL TTQEQPYSLN 120 PFSPTLALYR HASVTYSFAT ELGSDHLVGL PGRVFLRKMP EWTPDVRFFR SEEYPRIGYA 180 RKYQVRASLA LPVFQGASGD CLAVMEMVTT KQNMEYGSEL HSIFRALQAF DLRSSQTSFV 240 PPFLKPHTDL HTEVATVLQD ICSSYRLPLA LTWGRCLHHS NQDTFSHSSC VSSLVSASFA 300 ADEDSRCFLA ASSEHHLLGG EGIAGRAFAT KKRCFATDVA VFSKWSYPLS HYARMFNLHA 360 ALAIPLLSRR SRTVHLVIEL FFPRDCLDTE TQRWTLNLLA SEVNLRFQRS QHLVVDEGIA 420 EQVIFPVKDT ATPMTQNSFV VPEESPWISH MVEAKEKGKE VSVSWEYQRE ELKVGSDSVG 480 GNMSIRDSSS SSESRKRKTK AEKEITIDIL RQHFAGNLKD AAKSIGVCPT TLKRICRQHG 540 ILRWPSRKIK KVGHSLRKLQ VVIDSVEGVQ GSLHLGSFYS SFPQLQSSSS PALLTPTIHH 600 IHPSQTLTVH HQPFNLLPVP PKSPPSSSGS QSSSGSSTCC SSEEQPLLSG LQKPALSHPQ 660 LLSLQEQKPI RVTSSLPPLP AAKNSRKGKD GMKVKAMFGE SKVRMSLQQH WRLTDLRSEI 720 AKRFGIDDGL KSSFNLKYLD DDKEWVLLTC DADLDECIQV YKTSLKDTIR ILLLQPLSSF 780 A

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MEEADNNSSV LDFHDYLMDQ LLSEECLVET TQPDSDPFAS PSLSCILSDP PCSHQEEEHV  60
TSTYSSSASG LLSVKERLMC AMGYLQELMG ERELLIQLWV PIERGSRRVL TTQEQPYSLN  120
PFSPTLALYR HASVTYSFAT ELGSDHLVGL PGRVFLRKMP EWTPDVRFFR SEEYPRIGYA  180
RKYQVRASLA LPVFQGASGD CLAVMEMVTT KQNMEYGSEL HSIFRALQAF DLRSSQTSFV  240
PPFLKPHTDL HTEVATVLQD ICSSYRLPLA LTWGRCLHHS NQDTFSHSSC VSSLVSASFA  300
ADEDSRCFLA ASSEHHLLGG EGIAGRAFAT KKRCFATDVA VFSKWSYPLS HYARMFNLHA  360
ALAIPLLSRR SRTVHLVIEL FFPRDCLDTE TQRWTLNLLA SEVNLRFQRS QHLVVDEGIA  420
EQVIFPVKDT ATPMTQNSFV VPEESPWISH MVEAKEKGKE VSVSWEYQRE ELKVGSDSVG  480
GNMSIRDSSS SSESRKRKTK AEKEITIDIL RQHFAGNLKD AAKSIGVCPT TLKRICRQHG  540
ILRWPSRKIK KVGHSLRKLQ VVIDSVEGVQ GSLHLGSFYS SFPQLQSSSS PALLTPTIHH  600
IHPSQTLTVH HQPFNLLPVP PKSPPSSSGS QSSSGSSTCC SSEEQPLLSG LQKPALSHPQ  660
LLSLQEQKPI RVTSSLPPLP AAKNSRKGKD GMKVKAMFGE SKVRMSLQQH WRLTDLRSEI  720
AKRFGIDDGL KSSFNLKYLD DDKEWVLLTC DADLDECIQV YKTSLKDTIR ILLLQPLSSF  780
A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	493	498	SRKRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA20G00095

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411620.1	0.0	protein NLP3
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	A0A087GKN8	0.0	A0A087GKN8_ARAAL; Uncharacterized protein
STRING	A0A087GKN8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]