PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00053
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 185aa    MW: 20308 Da    PI: 4.7607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00053genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-182676155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  AA1G00053 26 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLKG 76
               68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-122676IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-302785IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-212786IPR016177DNA-binding domain
SMARTSM003803.8E-342790IPR001471AP2/ERF domain
PROSITE profilePS5103223.092784IPR001471AP2/ERF domain
PRINTSPR003674.4E-122839IPR001471AP2/ERF domain
CDDcd000182.99E-302885No hitNo description
PRINTSPR003674.4E-126686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNQTAVKSTN GVSAVKSTTT ATTRHPVYHG VRKRRWGKWV SEIREPRKKS RIWLGSFPVP  60
EMAAKAYDVA AFCLKGRKAL LNFPDEIEDL PRPDTCTPRD IQEAASKAAN AVKIVKNNDD  120
VAVLDGGDDV AVNGGDIIDC DDFWEGIELP ELMMSGGGWS PESLVTGDDA TWLVDGDCYQ  180
FMTCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1725871275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_563624.14e-87Integrase-type DNA-binding superfamily protein
SwissprotQ1ECI23e-88ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A178W4W81e-85A0A178W4W8_ARATH; Uncharacterized protein
STRINGAT1G01250.11e-86(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-82ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]