PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA19G00169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 157aa MW: 17823.9 Da PI: 7.5037 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 6.8e-32 | 96 | 153 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYG+K+vk+s++pr+YY+C+ gCpvkk+ver ++dp++v++tYeg+Hnh AA19G00169 96 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERYNDDPSFVITTYEGSHNH 153 59******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 82 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 89 | 153 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.666 | 91 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-36 | 96 | 155 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-25 | 97 | 153 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSMNNEGTNF AMSFSDETNS GAMFDEWLDD DLMSVISGIS QNINHQIQTS DVLMQGSSST 60 TPILTPTGRL ENQNLNQKKK VKERVAFKTR SDVDVLDDGF KWRKYGKKMV KNSPNPRNYY 120 KCSVDGCPVK KRVERYNDDP SFVITTYEGS HNHLGIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-27 | 86 | 153 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-27 | 86 | 153 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA19G00169 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197989.2 | 6e-61 | WRKY DNA-binding protein 50 | ||||
Swissprot | Q8VWQ5 | 5e-62 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | C0SVQ6 | 1e-59 | C0SVQ6_ARATH; Uncharacterized protein At5g26170 (Fragment) | ||||
STRING | AT5G26170.1 | 2e-60 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6121 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-64 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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