PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA16G00102

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Dof

Protein Properties

Length: 221aa MW: 23922.7 Da PI: 9.1692

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA16G00102	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++l+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG lrn+PvGgg rk+k+ss AA16G00102 37 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPVGGGYRKHKRSS 97 67899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	38	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.77	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MVGISSCSSQ DYHNHHQKKS SASSPAAAAA AVRASPPEQS LRCPRCDSTN TKFCYYNNYS 60 LSQPRYFCKS CRRYWTKGGI LRNIPVGGGY RKHKRSSATK SLRTTPEPIH NGSILGMGTG 120 NGYINNEQMD LGLAFALLNK QPFGGSAFLP EFGNSQLENA NYAFGNGGSG VEDIAAVDPN 180 KALWGFPWQM NMGGGNGHVD QIDSGRDVWS SINYINTGAL L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes (PubMed:22155632). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00392	DAP	Transfer from AT3G45610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA16G00102

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291755.1	1e-102	dof zinc finger protein DOF3.2
Swissprot	Q9M1E6	1e-95	DOF32_ARATH; Dof zinc finger protein DOF3.2
TrEMBL	R0HL64	1e-101	R0HL64_9BRAS; Uncharacterized protein
STRING	XP_006291755.1	1e-102	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6132	18	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	3e-92	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] de Lucas M, et al. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]