PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA15G00044

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 709aa MW: 82213.3 Da PI: 7.1669

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA15G00044	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.6e-22	108	191	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ l+HnH+l AA15G00044 108 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRILEVTLDHNHSL 191 69***************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-19	108	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-25	310	403	IPR018289	MULE transposase domain
Pfam	PF04434	4.8E-4	590	628	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.755	596	632	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-6	607	634	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MEGSESSDGD IDDVTVQVQA ASYLQTDDTR ERDDPMSDNG CSIRMEEALV CSSEHEMIGG 60 FNQNQNKSEE VTTDEFEDNQ SGCLPVDKKE FEAPAIGMEF ESYDDAYNYY NCYATEVGFR 120 VRVKNSWFKR RSKEKYGAVL CCSSQGFKRI NDVNRVRKET RTGCPAMIRM RQVDSKRWRI 180 LEVTLDHNHS LGSKIYRSVK RLVSGTKRKC LSSPVSDIKT IKLYRAHVMD TGDNLNPNST 240 LKQHQNPVGL PNVLNLRRGD SAAIYNYFCR MQLTNPNFFY LMDINDEGQL RNVFWSDAFS 300 RVSCSYFTDV IFIDNTYISG KYEIPLVTFL GVNHHGKTTL LSCGLLAGET VESYHWLLKV 360 WFSLTKCSPQ TIVTDRCKPL ETAVAEIFPR SHHRFSLTHI MKKVPEKLGG LHNYDVVRKA 420 FMKAVYETLK VVEFETAWGF MVHHFGVIDN EWLRSLYEER ARWAPVYLKD TFFAGIASTR 480 PGETMTPFFE KFVHKQTPLK EFLDKYELAL QKKHKEETSS DIESRNSNTE LKTRCSFETQ 540 ISRLYTRNMF KKFQVEVEEM YSCFSTTQLH IDGPFVIFLV KERVQIESNR REIRDFEVLY 600 NRSAGEVRCI CSCFNFHGYL CRHALCVLNF NGVEEIPSRY ILPRWRKDFK RIHLTGNGLT 660 DGSDRVQWFD ELYKNAVQVV EEGAVSLDHY KMALQVLQQS LDKVHSVEE

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MEGSESSDGD IDDVTVQVQA ASYLQTDDTR ERDDPMSDNG CSIRMEEALV CSSEHEMIGG  60
FNQNQNKSEE VTTDEFEDNQ SGCLPVDKKE FEAPAIGMEF ESYDDAYNYY NCYATEVGFR  120
VRVKNSWFKR RSKEKYGAVL CCSSQGFKRI NDVNRVRKET RTGCPAMIRM RQVDSKRWRI  180
LEVTLDHNHS LGSKIYRSVK RLVSGTKRKC LSSPVSDIKT IKLYRAHVMD TGDNLNPNST  240
LKQHQNPVGL PNVLNLRRGD SAAIYNYFCR MQLTNPNFFY LMDINDEGQL RNVFWSDAFS  300
RVSCSYFTDV IFIDNTYISG KYEIPLVTFL GVNHHGKTTL LSCGLLAGET VESYHWLLKV  360
WFSLTKCSPQ TIVTDRCKPL ETAVAEIFPR SHHRFSLTHI MKKVPEKLGG LHNYDVVRKA  420
FMKAVYETLK VVEFETAWGF MVHHFGVIDN EWLRSLYEER ARWAPVYLKD TFFAGIASTR  480
PGETMTPFFE KFVHKQTPLK EFLDKYELAL QKKHKEETSS DIESRNSNTE LKTRCSFETQ  540
ISRLYTRNMF KKFQVEVEEM YSCFSTTQLH IDGPFVIFLV KERVQIESNR REIRDFEVLY  600
NRSAGEVRCI CSCFNFHGYL CRHALCVLNF NGVEEIPSRY ILPRWRKDFK RIHLTGNGLT  660
DGSDRVQWFD ELYKNAVQVV EEGAVSLDHY KMALQVLQQS LDKVHSVEE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA15G00044

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500853.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1J3GPJ1	0.0	A0A1J3GPJ1_NOCCA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_010500853.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]