PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA14G00056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | G2-like | ||||||||
Protein Properties | Length: 107aa MW: 12778.2 Da PI: 7.844 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.1 | 1.3e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vkgLt++hvkSHLQ+YR AA14G00056 1 MDVKGLTISHVKSHLQMYRG 20 9******************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-9 | 1 | 20 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MDVKGLTISH VKSHLQMYRG SKLTLTKPEL SYSSSSRRRR RQDNEEDDLH DTRNDCLLGF 60 HSFNFREQSS DNDDDDFLHI MKMERRSKTF ADISDSFKFH SHHLRFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA14G00056 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632579.1 | 5e-41 | putative Myb family transcription factor At1g14600 isoform X2 | ||||
Swissprot | Q700D9 | 9e-38 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0GJS6 | 7e-38 | R0GJS6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3501s0036.1.p | 1e-38 | (Capsella grandiflora) | ||||
STRING | XP_006303284.1 | 1e-38 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-39 | G2-like family protein |