PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA13G00053
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 530aa    MW: 60197.8 Da    PI: 4.7825
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA13G00053genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.83.5e-9918253021374
        GRAS  21 qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119
                   ++ ++++ +s+ g+p++R+ +yf+eAL+++l +         +     +++ ++ ++ +k++++++P+ kf+hltaNqaIlea+++ +++HiiDf+i
  AA13G00053 182 ADTIVKIHKSVSELGNPTERVGFYFAEALSNKLPK---------NE----TESLEDFIFCYKTLNDACPYSKFAHLTANQAILEATDKYSKIHIIDFGI 267
                 4567789999***********************99.........22....23489******************************************** PP

        GRAS 120 sqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                  qG+QW++LlqaLa+R++g+p ++Ri g+  p+ +   ++ +l +tg+rL++fA+ l+++fef++ + + ++ l+ +++r++p+E+laVn++l+l++ll
  AA13G00053 268 FQGIQWASLLQALATRSSGKPtQIRISGIPTPSLSespESSSLIATGNRLRDFAKVLDLNFEFEP-ILTPVQYLTGSSFRIEPDESLAVNFMLELYKLL 365
                 *****************77776*********99888899999***********************.799****************************** PP

        GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv...acegae...rre 307
                 de+ ++ +   +vL+l ksl+Pk+v++ e e+ +n+ +F +r+ + l++y+a+f+sl+ kl r+s+er  vEr l+g++i+ ++    c+g+     +e
  AA13G00053 366 DETSTTLN---NVLRLTKSLKPKIVTLGEYEVRLNRFEFSNRVKNGLRFYTAIFESLDRKLDRNSKERLRVERILFGKKISALIgfgHCNGKPeitGEE 461
                 99999888...9************************************************************************444366654232468 PP

        GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                 ++  + +W++ +e+aGF++v+ls++a +qa++ll +++    y++ e++  +v l W++ p+++vS+W+
  AA13G00053 462 QMSDKDQWKMLMERAGFESVKLSNYALSQAEMLLWNYEyRSLYSLIESKPGFVsLAWNNVPILTVSSWQ 530
                 899999********************************8888***999999999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.642137508IPR005202Transcription factor GRAS
PfamPF035141.2E-96182530IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAYMCSDTGN LMAIAQQLIK QKQKQQQHQQ NQQQSHLIVS NSHYTLPYPG LPDPFQLTGD  60
PFFQFPRVDH QNAVVSDFGG DFDSDDWMDT LISGDDSSTW QTNLYSQPSD LNRIIFSDKT  120
EDPASPISNP PLTHPSPELS TYTTTNELQI NESLTDFDLE SPILNAIHEF AVKSEFEQEI  180
DADTIVKIHK SVSELGNPTE RVGFYFAEAL SNKLPKNETE SLEDFIFCYK TLNDACPYSK  240
FAHLTANQAI LEATDKYSKI HIIDFGIFQG IQWASLLQAL ATRSSGKPTQ IRISGIPTPS  300
LSESPESSSL IATGNRLRDF AKVLDLNFEF EPILTPVQYL TGSSFRIEPD ESLAVNFMLE  360
LYKLLDETST TLNNVLRLTK SLKPKIVTLG EYEVRLNRFE FSNRVKNGLR FYTAIFESLD  420
RKLDRNSKER LRVERILFGK KISALIGFGH CNGKPEITGE EQMSDKDQWK MLMERAGFES  480
VKLSNYALSQ AEMLLWNYEY RSLYSLIESK PGFVSLAWNN VPILTVSSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1341615302375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA13G00053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426606.10.0PREDICTED: scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLA0A1J3J6B70.0A0A1J3J6B7_NOCCA; Scarecrow-like protein 7 (Fragment)
STRINGXP_010426606.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]