PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA1352G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 23273.1 Da PI: 4.5038 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.3e-18 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+A +a++ a+++++g AA1352G00001 19 PVYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 69 68*****888.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-12 | 19 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-34 | 20 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 20 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 20 | 77 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.209 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-32 | 21 | 79 | No hit | No description |
PRINTS | PR00367 | 3.0E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MVDSSKGNKE KVDDSGKQPV YRGVRKRSWG KWVSEIREPR KKSRIWLGTF PTAEMAMRAH 60 DVAALSIKGA SAILNFPELS KFLPTPISLS PRDIRDAATK AAFMDFKSLN SVSQVRSETE 120 TESEASETSE TSETTSFSSF VELPSLRTSL DESKELETEL EMFESLEELV LMPQWLNGTE 180 EDFLYKNDSP LNTVFDDTFL FSWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 21 | 78 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00467 | DAP | Transfer from AT4G32800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA1352G00001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626957.1 | 3e-80 | PREDICTED: ethylene-responsive transcription factor ERF043-like | ||||
Refseq | XP_013654883.2 | 4e-80 | ethylene-responsive transcription factor ERF043-like | ||||
Swissprot | Q9M080 | 4e-70 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A078I7C6 | 2e-80 | A0A078I7C6_BRANA; BnaA08g12010D protein | ||||
STRING | Bo3g171090.1 | 1e-79 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 2e-57 | ERF family protein |
Publications ? help Back to Top | |||
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