PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00330
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 419aa    MW: 46978 Da    PI: 8.3825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00330genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-112147127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                +++++C+++ rtG C++G++C+F+H+p
  AA10G00330 21 PGEPNCSYYIRTGLCRFGSTCRFNHPP 47
                5789*********************97 PP
2zf-CCCH37.54e-126892327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                +++C ++++tGtCk+G +CkF+H++
  AA10G00330 68 QPECEYYLKTGTCKFGVTCKFHHPR 92
                799********************96 PP
3zf-CCCH36.29.9e-12114138327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C +f+rtG+Ck+G++CkF+H++
  AA10G00330 114 EVDCAYFLRTGHCKFGGTCKFNHPQ 138
                 679********************97 PP
4zf-CCCH35.91.3e-11301327127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG C++G  CkF+H++
  AA10G00330 301 PGQPECQFYMKTGDCRFGTVCKFHHPR 327
                 5789*********************96 PP
5zf-CCCH29.99.6e-10348373227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++lC f+ r+G+Ck+G +CkF H++
  AA10G00330 348 GEPLCAFYTRYGICKFGHSCKFDHPM 373
                 789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.542048IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-42047IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-52548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-42646IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1086593IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-56592IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-96892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-66993IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-47192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587111139IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6114139IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9114138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249300328IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5300327IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4306328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324346374IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4346373IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7348373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5349374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MWQMNLSSDE TMEGGSYPER PGEPNCSYYI RTGLCRFGST CRFNHPPDRE LVINTARMRG  60
EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNVAGIAGR VSLNMLGYPL RQNEVDCAYF  120
LRTGHCKFGG TCKFNHPQPA NMMVSVRGSP VYPAVQSPTT DQQSYSWSRA SFIANPRWQD  180
PSSFPSLLMP QGMVPVQGWN AYSVSLLQSI VIKVLNFHKV IGLRRLLFST YNLFCLTSFH  240
QGQLSSVSPS GTDQNYRNLQ QTETNESGSQ FQVPFSGYQS SSVPVGGFYA LPRDNIFPER  300
PGQPECQFYM KTGDCRFGTV CKFHHPRDRQ TPPPDCPLSP LDLPLRQGEP LCAFYTRYGI  360
CKFGHSCKFD HPMPVFPYNN NGASSGAADE LVETSSGKPR RVSGSETRQA TTSGKDTEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179781e-126AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259661e-126BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296584.20.0zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A087H6D90.0A0A087H6D9_ARAAL; Uncharacterized protein
STRINGA0A087H6D90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]