PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA10G00173

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 439aa MW: 49436.2 Da PI: 5.8549

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA10G00173	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.6e-33	239	293	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+F+ea++qLGGse+AtPk++l+lm+ +gLt++hvkSHLQkYR+ AA10G00173 239 KQRMRWTPELHEAFIEAINQLGGSERATPKAVLKLMNSPGLTIYHVKSHLQKYRT 293 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.913	236	296	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	237	293	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-30	238	295	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-24	239	293	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-11	241	292	IPR001005	SANT/Myb domain
Pfam	PF14379	8.8E-22	329	373	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MTVASDFGFA TAMSSSYPVI TTSLEERYLK FPNSFWLSSG QELMNNPVPC QVFPLVSGGN 60 SGGSLYSSSS GFCNGSYVSA ASPQERNPPQ MPPIVSTVPR DRTRQRQEYP LEIQSQSLIN 120 HPQEQKDMTW STDQLQEFFD FPDHVSLPDQ QAESSRAIVL SEQVHTKSEW PDWADQLISV 180 DDGVEPNWSE LLGDSNVHNP DSKIIPTSSS DIVRQEIAVN QHQMEPSGKN SPASSMTSKQ 240 RMRWTPELHE AFIEAINQLG GSERATPKAV LKLMNSPGLT IYHVKSHLQK YRTARYKPEL 300 SEVTEESPEK KLKTFDDIKS LDLKTSIGIT EALRLQMEVQ KRLHEQLEKQ RKLQLQIEEQ 360 GRYLQMMFEK QQKLQENKKD SSCSSSMPEA DPSTPSPDLS QAISKVVNSE PHQKLQMGSS 420 RKDQSESGCG SSRKRVREN

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MTVASDFGFA TAMSSSYPVI TTSLEERYLK FPNSFWLSSG QELMNNPVPC QVFPLVSGGN  60
SGGSLYSSSS GFCNGSYVSA ASPQERNPPQ MPPIVSTVPR DRTRQRQEYP LEIQSQSLIN  120
HPQEQKDMTW STDQLQEFFD FPDHVSLPDQ QAESSRAIVL SEQVHTKSEW PDWADQLISV  180
DDGVEPNWSE LLGDSNVHNP DSKIIPTSSS DIVRQEIAVN QHQMEPSGKN SPASSMTSKQ  240
RMRWTPELHE AFIEAINQLG GSERATPKAV LKLMNSPGLT IYHVKSHLQK YRTARYKPEL  300
SEVTEESPEK KLKTFDDIKS LDLKTSIGIT EALRLQMEVQ KRLHEQLEKQ RKLQLQIEEQ  360
GRYLQMMFEK QQKLQENKKD SSCSSSMPEA DPSTPSPDLS QAISKVVNSE PHQKLQMGSS  420
RKDQSESGCG SSRKRVREN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-28	239	297	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA10G00173

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118630	1e-157	AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
GenBank	BT005352	1e-157	BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882350.1	0.0	myb family transcription factor PHL13 isoform X1
Swissprot	F4J3P7	0.0	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	D7L252	0.0	D7L252_ARALL; Transcription factor
STRING	fgenesh1_pm.C_scaffold_3000324	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.1	1e-174	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]