PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA10G00152

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 332aa MW: 36788.7 Da PI: 9.9463

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA10G00152	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.5	2.1e-31	265	322	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver++++p+++++tYegeHnh+ AA10G00152 265 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCTDEPSMLIVTYEGEHNHS 322 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.2E-16	215	261	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.6E-34	251	323	IPR003657	WRKY domain
PROSITE profile	PS50811	30.044	258	324	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-27	261	322	IPR003657	WRKY domain
SMART	SM00774	7.4E-38	263	323	IPR003657	WRKY domain
Pfam	PF03106	2.3E-27	265	321	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEEIEAANKS AVESCHGVLN LLSQQTSDPK AITAQTREAV SKFKKVASLL TRGSGHGKFR 60 SINKFRSSFP QHIFLESPVC CGYSPVLAPE PLQMIPAPVS YNEINPKQQQ GHHPPLLLSH 120 KMCVEKSFLE LKPQSFRTPY QFSHNHQQIA YSRSNSGVNL KFDGSGSCYT PSVSNGSRSF 180 VSSLSMDGSV ADCDRNSFHL IGLSHGSDQN SQHSRKMCSG KRGEDGSLKC GSRSKCHCSK 240 KRKLRVKRSI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH 300 VERCTDEPSM LIVTYEGEHN HSRIATSQSA HT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-20	256	322	7	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA10G00152

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF404860	2e-96	AF404860.1 Arabidopsis thaliana WRKY transcription factor 39 (WRKY39) mRNA, complete cds.
GenBank	AY053420	2e-96	AY053420.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
GenBank	AY133586	2e-96	AY133586.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020888964.1	0.0	probable WRKY transcription factor 39
Swissprot	Q9SR07	0.0	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	D7L2W9	0.0	D7L2W9_ARALL; WRKY DNA-binding protein 39
STRING	fgenesh2_kg.3__432__AT3G04670.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-178	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]