PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA102G00344

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

ARR-B

Protein Properties

Length: 338aa MW: 38220.1 Da PI: 5.5135

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA102G00344	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	70.1	3.4e-22	97	152	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl Wt +L ++Fveav++L + ekA+Pk+ile+m+v+ Lt +v SHLQkYR AA102G00344 97 KARLSWTDQLRKKFVEAVDELETKgEKAVPKKILEVMNVENLTKWNVSSHLQKYRK 152 68*****************764489**************************6 PP
2	Response_reg	53.8	1.1e-18	4	83	31	109
SHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 31 dgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +++ a e+++ek+ +Dl+++ emp+mdG+ell+ i ++ ++p+i++++ + e++++a+++Ga +l+Kp +e + + AA102G00344 4 KSRTAFEWVREKKnkFDLMIIETEMPEMDGFELLQLIIRHT-NIPVIMMSRDTNAELMEKAIRYGAYFVLTKPLTIEMIKT 83 567788999777777********************8888.9*******************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50110	23.856	1	89	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	6.8E-15	3	82	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	6.1E-18	4	95	No hit	No description
SuperFamily	SSF52172	3.42E-19	6	97	IPR011006	CheY-like superfamily
CDD	cd00156	3.78E-16	15	82	No hit	No description
SuperFamily	SSF46689	1.76E-14	95	153	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-23	96	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-20	97	152	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAYKSRTAFE WVREKKNKFD LMIIETEMPE MDGFELLQLI IRHTNIPVIM MSRDTNAELM 60 EKAIRYGAYF VLTKPLTIEM IKTTCLIIIE DSTNQKKARL SWTDQLRKKF VEAVDELETK 120 GEKAVPKKIL EVMNVENLTK WNVSSHLQKY RKNSDNKRAI AARNNDSEMS SQGFQIQTKT 180 GAKAAARRPT FNLSKMSSNN SLHQSGPLID TTTPAPASGT FFQALNDIRE YLSHQSAHQN 240 PSEAIVSNNS LPMVALSNSF LGGNQEQSGF SNEYSGFNVP INEFEVPLET NLDGNQTGFY 300 RNMEVGDEVY ESYLMDKENE LPSGSIDSRD GSLTDLVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-14	93	151	1	57	ARR10-B

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA102G00344

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15903	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	4e-35	response regulator 10