PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA102G00327
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 374aa    MW: 43114.7 Da    PI: 8.2094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA102G00327genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-1425991495
                 T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3 14 grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                 + + +p  f+++h +g+ e+  t  l++  s ++W+vkl  ++++    lt+GW++F+ a++ + gDfvvFk++g+  f  +v+
  AA102G00327 25 AHVNIPVAFFSAHiEGIYER-NTAELRSnASDKTWTVKL--EGRR----LTDGWEDFALAHDFRIGDFVVFKYEGDLVF--FVT 99
                 4478*********9555444.47888875888*******..8888....************************997555..555 PP
2B3482.2e-15144217578
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                   ++ ++l+ + l lp++  ++ ++k +e++ ++l++++g r+We +l+yr +s+++++ +GW++F+++ngLk+gD
  AA102G00327 144 HITDSNLQVDTLFLPRRLGTSGDLK-REDRRIILMNKQGrRRWEANLRYRESSKSFYIIGGWRSFCEENGLKSGD 217
                  56778888899*******9777766.567789999988879*********************************9 PP
3B347.92.4e-15278373597
                  -..-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
           B3   5 ltpsdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                   ++++++++   ++ ++p  f ++++++k++ ++++l d++g +W+ +l  ++ s++++l+kGW+eF++ n+++  +++v +++++ ++  + +k++
  AA102G00327 278 VSSKHNFSLigvDIRYFPMAFSRANEMEKAG-TKIILVDKDGVKWNATLGTENVSKKMFLRKGWREFCEVNEVEIEESFVMEFVWEdKTVAPILKFC 373
                  5555555555556678999***99*988765.6****************99999999***************************9877777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-1811113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1711110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54712104IPR003340B3 DNA binding domain
CDDcd100178.98E-1413101No hitNo description
SMARTSM010192.7E-1915104IPR003340B3 DNA binding domain
PfamPF023622.3E-92693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-15132217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-14135217IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-9140237IPR003340B3 DNA binding domain
CDDcd100173.20E-11140217No hitNo description
PROSITE profilePS5086312.393140237IPR003340B3 DNA binding domain
PfamPF023621.1E-12144217IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14255371IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.0E-10262374IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842277374IPR003340B3 DNA binding domain
PfamPF023624.1E-14281373IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-13290366IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-13293363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAKSPIRYPP INPHFFQPLL SGVHAHVNIP VAFFSAHIEG IYERNTAELR SNASDKTWTV  60
KLEGRRLTDG WEDFALAHDF RIGDFVVFKY EGDLVFFVTG FGPSCCEIQY LQSRTLSGEE  120
IQQNKINPEA ESSSSSDNSC FVSHITDSNL QVDTLFLPRR LGTSGDLKRE DRRIILMNKQ  180
GRRRWEANLR YRESSKSFYI IGGWRSFCEE NGLKSGDEAR EEQGNNTCSY LTAESNNAHQ  240
QKMESRKRRR EMRKNSSTDN RFVTLTVTPY NHKNCKVVSS KHNFSLIGVD IRYFPMAFSR  300
ANEMEKAGTK IILVDKDGVK WNATLGTENV SKKMFLRKGW REFCEVNEVE IEESFVMEFV  360
WEDKTVAPIL KFCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245249RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA102G00327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.18e-66B3 family protein