PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA102G00071
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HRT-like
Protein Properties Length: 433aa    MW: 48961.9 Da    PI: 9.2459
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA102G00071genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.74e-18233263131
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  +CGviledG  C+++PvkgRKRC eHKG+Ri
  AA102G00071 233 VCGVILEDGGSCNETPVKGRKRCIEHKGQRI 263
                  7*****************************7 PP
2HRT-like48.31.7e-15285315131
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  iCGvil d  +C ++P++gRKRCe HKGmRi
  AA102G00071 285 ICGVILPDMKPCGNKPAPGRKRCEDHKGMRI 315
                  8*****************************7 PP
3HRT-like57.52.2e-18401431131
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  +CGv+l +G vC+r+PvkgRKRCeeHKGmRi
  AA102G00071 401 TCGVKLCNGFVCERSPVKGRKRCEEHKGMRI 431
                  7*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGYGGDDFPF AVVPTVFKRE DYKRTKHDAV FSKWQILIGS KDWEDFKDGK DGVGRYRVQN  60
LPSKSFPGLY ELGVAVTSEV HGRKLEVDDV LVSYLGQAEN VRSRLQSYGR SGAHLRNVNY  120
NESLDKKSVT SSLFEDIFSN GGSILYRWAP MRSKREAEAT EGMLLCTFDY AWNKGSNGER  180
RELDLLRKLG NGEFMNQRKS EISRVLFPFL KNQVGIEVKG EKHVLKEERY SSVCGVILED  240
GGSCNETPVK GRKRCIEHKG QRICRVSPEK QRSKKPEIYI DSDVICGVIL PDMKPCGNKP  300
APGRKRCEDH KGMRINAFLF LLNSQDLNKT VKDEKFDTIT HLEVNEGEAL SRFCEAITKS  360
GLPCTRNSPK GSKRCWQHRE KISDVESSET VSPVTVKVVV TCGVKLCNGF VCERSPVKGR  420
KRCEEHKGMR IVS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA102G00071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866167.10.0protein EFFECTOR OF TRANSCRIPTION 2
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLD7MM690.0D7MM69_ARALL; Uncharacterized protein
STRINGscaffold_802235.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2