PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan021546

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

G2-like

Protein Properties

Length: 361aa MW: 40302.8 Da PI: 4.8303

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55089108	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-574160992	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110.7	7.5e-35	154	208	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ Aan021546 154 KPRMRWTPELHESFVEAVNQLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 208 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.107	151	211	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-32	152	210	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-18	153	208	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-25	154	208	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-10	156	207	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-22	242	287	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGASGAMSSQ NIPLVSRSSS DTVPFQVSQT SNFVNAQPVT VIGQSNAMTW GTESLDDLLE 60 FPESVISGNS QIEQQNALNS AGDHGRGNDS NWQHWDQLMS VDDNIESNWS EILADVDVPS 120 LEPKQIQPVT SRPPVPTIEA CPVGSPTPNG SSIKPRMRWT PELHESFVEA VNQLGGSERA 180 TPKGVLKLMN VEGLTIYHVK SHLQKYRTAR YKPELDEGTS EKKPTSIDEI VSMDIKNKSL 240 GFTDALKLQM EVQKQLHEQL EIQRNLQLRI EEQGKYLQMM FEQQRKMENE RLKPSSSNPD 300 EDPSRSNATE KPNDDKDSQK SKSKSTLQTE DQDVNKSNIN KECSPRISKR ARPDDDVASM 360 P

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGASGAMSSQ NIPLVSRSSS DTVPFQVSQT SNFVNAQPVT VIGQSNAMTW GTESLDDLLE  60
FPESVISGNS QIEQQNALNS AGDHGRGNDS NWQHWDQLMS VDDNIESNWS EILADVDVPS  120
LEPKQIQPVT SRPPVPTIEA CPVGSPTPNG SSIKPRMRWT PELHESFVEA VNQLGGSERA  180
TPKGVLKLMN VEGLTIYHVK SHLQKYRTAR YKPELDEGTS EKKPTSIDEI VSMDIKNKSL  240
GFTDALKLQM EVQKQLHEQL EIQRNLQLRI EEQGKYLQMM FEQQRKMENE RLKPSSSNPD  300
EDPSRSNATE KPNDDKDSQK SKSKSTLQTE DQDVNKSNIN KECSPRISKR ARPDDDVASM  360
P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-32	154	212	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024969562.1	0.0	protein PHR1-LIKE 1-like
Refseq	XP_024969564.1	0.0	protein PHR1-LIKE 1-like
Refseq	XP_024969565.1	0.0	protein PHR1-LIKE 1-like
Swissprot	F4J3P7	1e-72	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	A0A2U1P4G9	0.0	A0A2U1P4G9_ARTAN; Myb domain
STRING	cassava4.1_007149m	1e-103	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	2e-75	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]