PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan021252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C3H | ||||||||
Protein Properties | Length: 217aa MW: 24375.3 Da PI: 9.7729 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 43 | 66 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr + + C++G+ C+F+H Aan021252 43 REATCRQYEE-NVCNRGGYCNFMHL 66 6789**9999.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54928 | 4.62E-9 | 2 | 42 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 1.3E-8 | 3 | 38 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 2.4E-16 | 23 | 47 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.465 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 2.4E-16 | 58 | 70 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
XVGNVYVQFR EEEHAASALQ NLTGRFYAGR PIIVDFSPVT DFREATCRQY EENVCNRGGY 60 CNFMHLKKIS RELRRQFLGE AGGGEVEAEA TVRKGTVVMK NVAIAGGSGR RGAGDYADHD 120 RHHDRSGRRP RSRSPGRRGG RSRSPGGKRN RSPIREGSAE RRAKIEQWNR EREQADSRPK 180 TATDNNNNDG AVSPNGDQYY DPHQQPQQQH DNGGYDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 2e-23 | 2 | 78 | 104 | 180 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.18393 | 2e-91 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024971648.1 | 1e-83 | splicing factor U2af small subunit B-like | ||||
Refseq | XP_024971655.1 | 1e-83 | splicing factor U2af small subunit B-like | ||||
Swissprot | Q9FMY5 | 9e-46 | U2AFB_ARATH; Splicing factor U2af small subunit B | ||||
TrEMBL | A0A2U1PLC6 | 2e-97 | A0A2U1PLC6_ARTAN; Nucleotide-binding, alpha-beta plait | ||||
STRING | XP_008779329.1 | 4e-81 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 6e-11 | C3H family protein |
Publications ? help Back to Top | |||
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