PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020513

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

TALE

Protein Properties

Length: 644aa MW: 71687.6 Da PI: 7.9531

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41966399	PU_unref	Unigene	View CDS
gnl\|UG\|Aan#S41966400	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-49072	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.4	5.9e-09	378	415	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt qV++WF N R + Aan020513 378 FEHflHPYPKDSDKHMLAKQTGLTRGQVSNWFINARVR 415 554459******************************88 PP
2	BELL	118.2	3.7e-38	241	312	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe++ag+gsak Yt+lAl++iS++FrcLkdai +qi Aan020513 241 ERQEVQMKKAKLVNMLDEVEQRYRQYHNQMQIVISWFEQAAGIGSAKTYTALALQTISKQFRCLKDAILGQI 312 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-56	170	310	IPR006563	POX domain
Pfam	PF07526	1.2E-47	175	308	IPR006563	POX domain
PROSITE profile	PS50071	11.936	356	419	IPR001356	Homeobox domain
CDD	cd00086	3.16E-11	359	420	No hit	No description
SMART	SM00389	2.9E-8	359	423	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.05E-16	360	425	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-28	362	425	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-17	376	415	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MATYYNSNSE IQGGDGLQTL VLMNHGYVNY SDTQQQSQQQ PSQQGNIMFL NNHHQHTSFI 60 TYNTTNHFPN TTIRRCPTFS TTIGLNSLQQ DMSSLHAFMP RVHYNMYNPV EMTTQPHEVN 120 RFQQGLSLSL SSQQSGFGSQ AAGVATISPS SDERATGSTP SASGVSNGVN GMQSVLLNSK 180 YLKATHELLE EVVNVGKDVF KNSEQSSKSL KAIGSPTARE GLSHEESSSK RGDGAELTTA 240 ERQEVQMKKA KLVNMLDEVE QRYRQYHNQM QIVISWFEQA AGIGSAKTYT ALALQTISKQ 300 FRCLKDAILG QIKTASRSLG EEDSFGGKSE GGSRLKFVDN QLRQQRALQQ LGMIQHNAWR 360 PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRGQVSNWFI NARVRLWKPM 420 VEEMYLEEIK ENEQNKSDEN KATKSEQSED NSSSKHEKSL SPENSKRGFN HPPPPHMTVS 480 TTISTSPTAT RINFQNPSSF TLIGSSQMDG ITQYSPKKPR NNGRQDAGFT LMGNPTDFMG 540 SLGGYQIGEI GRFNPEQFHQ QYSGNGVSLT LGLPHGDNLS MSGGHQSFLP NQNIHLSRGV 600 ELGESNEFDA MNQQPSSHSA AMYETMNIQN QKRFGSQPLP DFVA

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MATYYNSNSE IQGGDGLQTL VLMNHGYVNY SDTQQQSQQQ PSQQGNIMFL NNHHQHTSFI  60
TYNTTNHFPN TTIRRCPTFS TTIGLNSLQQ DMSSLHAFMP RVHYNMYNPV EMTTQPHEVN  120
RFQQGLSLSL SSQQSGFGSQ AAGVATISPS SDERATGSTP SASGVSNGVN GMQSVLLNSK  180
YLKATHELLE EVVNVGKDVF KNSEQSSKSL KAIGSPTARE GLSHEESSSK RGDGAELTTA  240
ERQEVQMKKA KLVNMLDEVE QRYRQYHNQM QIVISWFEQA AGIGSAKTYT ALALQTISKQ  300
FRCLKDAILG QIKTASRSLG EEDSFGGKSE GGSRLKFVDN QLRQQRALQQ LGMIQHNAWR  360
PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRGQVSNWFI NARVRLWKPM  420
VEEMYLEEIK ENEQNKSDEN KATKSEQSED NSSSKHEKSL SPENSKRGFN HPPPPHMTVS  480
TTISTSPTAT RINFQNPSSF TLIGSSQMDG ITQYSPKKPR NNGRQDAGFT LMGNPTDFMG  540
SLGGYQIGEI GRFNPEQFHQ QYSGNGVSLT LGLPHGDNLS MSGGHQSFLP NQNIHLSRGV  600
ELGESNEFDA MNQQPSSHSA AMYETMNIQN QKRFGSQPLP DFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	365	423	5	63	Homeobox protein Meis2
3k2a_B	6e-16	365	423	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024981053.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024981063.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024981072.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-146	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2U1PL73	0.0	A0A2U1PL73_ARTAN; TALE protein
STRING	EOY08486	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-132	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]