PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020422

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

TCP

Protein Properties

Length: 390aa MW: 43802.6 Da PI: 5.9858

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55021749	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-754160997	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.4	1.5e-39	116	215	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg....... 88 agkkdrhskihT++g+RdRR+Rls+++a++fFdL d+LGfdk+sktieWL++++k+ai+e t+t + + s+ +++ + Aan020422 116 AGKKDRHSKIHTAQGLRDRRMRLSVHTARKFFDLNDMLGFDKASKTIEWLFNKSKKAIDEVTETiqsddaT-------QRTSNDNNDI----Esslspce 204 89**************************************************************4322221.......2222222222....22223443 PP TCP 89 ..........k 89 Aan020422 205 tesmieiitaG 215 33333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.0E-38	117	241	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.588	118	176	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MDYMFPSRNN ENLLLNSNKL TNHGDIGLGQ ENVSASSLLL DCLIKSSAVH KNSQEGEPPL 60 SMHVPSPFFN EMNNEGHVTA TTTTTIGSQN NPLKLCNTTK EPLASKLKGV RKKRSAGKKD 120 RHSKIHTAQG LRDRRMRLSV HTARKFFDLN DMLGFDKASK TIEWLFNKSK KAIDEVTETI 180 QSDDATQRTS NDNNDIESSL SPCETESMIE IITAGTDKDD NLEVQGDHDI NQIEDESSLG 240 RTRGRMMFHT VNKPKQMFQA DSNVDFHQSQ LEFSQNLDNQ NMEESSCYPL EFSNTYHCLK 300 HLHLDNTVRN TDTYFNYNKT VAEPPAGWLN SRNTFLGFLG GWDSDLPRIE SNNGIMPNIA 360 PLTGSMNEEN PSSGLNCSSF VNFHLQNHGP

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MDYMFPSRNN ENLLLNSNKL TNHGDIGLGQ ENVSASSLLL DCLIKSSAVH KNSQEGEPPL  60
SMHVPSPFFN EMNNEGHVTA TTTTTIGSQN NPLKLCNTTK EPLASKLKGV RKKRSAGKKD  120
RHSKIHTAQG LRDRRMRLSV HTARKFFDLN DMLGFDKASK TIEWLFNKSK KAIDEVTETI  180
QSDDATQRTS NDNNDIESSL SPCETESMIE IITAGTDKDD NLEVQGDHDI NQIEDESSLG  240
RTRGRMMFHT VNKPKQMFQA DSNVDFHQSQ LEFSQNLDNQ NMEESSCYPL EFSNTYHCLK  300
HLHLDNTVRN TDTYFNYNKT VAEPPAGWLN SRNTFLGFLG GWDSDLPRIE SNNGIMPNIA  360
PLTGSMNEEN PSSGLNCSSF VNFHLQNHGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-14	123	176	1	54	Putative transcription factor PCF6
5zkt_B	1e-14	123	176	1	54	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.127	0.0	leaf\| trichome

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024992301.1	1e-142	transcription factor TCP12-like
TrEMBL	A0A2U1NGW5	0.0	A0A2U1NGW5_ARTAN; Transcription factor, TCP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	5e-27	TCP domain protein 12