PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020145

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HB-other

Protein Properties

Length: 264aa MW: 29326.5 Da PI: 9.0646

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-164160990	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.4e-21	123	178	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe+ F+ n++p+++er L kkl+L+ +qVk+WFqNrR+++k Aan020145 123 RQKYHRHTPYQIQELEASFKDNPHPDEKERLALGKKLNLENKQVKFWFQNRRTQMK 178 678899***********************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-22	98	182	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.13E-21	108	180	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.815	120	180	IPR001356	Homeobox domain
SMART	SM00389	7.2E-18	121	184	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-18	123	178	IPR001356	Homeobox domain
CDD	cd00086	8.27E-18	123	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
RVSSFGGFYG GGGGGGGSDS RMMVSDGSFN TMPMQGLPFS QPQLITSTIN QPIYNSQSLS 60 LALKPKMEGL GEMGLIGENF EGNLGRVRGD GSESRSGGSD NLEGASGDEQ DVPVGPSSSS 120 RRRQKYHRHT PYQIQELEAS FKDNPHPDEK ERLALGKKLN LENKQVKFWF QNRRTQMKTQ 180 LERHENAILK QENDKLRIEN IAMKEAIRAP VCNNCGGQAI LGDISIDEHH LRIENARLRD 240 ELSRISILAN KFXRKAFYPL LAVX

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024991925.1	1e-156	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	7e-75	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2U1N5L5	1e-172	A0A2U1N5L5_ARTAN; Homeobox protein 7
STRING	XP_009774401.1	1e-104	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-70	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]