PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan018545
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TALE
Protein Properties Length: 482aa    MW: 53218.4 Da    PI: 8.2287
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41936682PU_unrefUnigeneView CDS
gnl|UG|Aan#S41963493PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-92571PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.6e-102162531954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Aan018545 216 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 253
                564459******************************88 PP
2BELL121.14.8e-3976147172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe++ag+gsak Yt+lAl++iS++FrcLkdai +qi
  Aan018545  76 ERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISWFEQAAGIGSAKTYTALALQTISKQFRCLKDAILGQI 147
                79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-571145IPR006563POX domain
PfamPF075263.7E-484143IPR006563POX domain
PROSITE profilePS5007112.195194257IPR001356Homeobox domain
SMARTSM003895.3E-9197261IPR001356Homeobox domain
CDDcd000862.47E-11197258No hitNo description
SuperFamilySSF466895.13E-17198263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-29200263IPR009057Homeodomain-like
PfamPF059201.8E-18214253IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
XHNMLLNSKY LKATQEVLEE VVNVGKVAVK NSDQLNKNLK TVGSGSGDGG SSPPVTGEGH  60
ETGSKSGGGA ELTTAERQEI QMKKAKLINM LDEVEQRYRQ YHHQMQIVIS WFEQAAGIGS  120
AKTYTALALQ TISKQFRCLK DAILGQIKAA SRSLGEDESL GGGGKGEGSG SRLKFVDNQL  180
RQQRALQQLG MIQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR  240
SQVSNWFINA RVRLWKPMVE EMYLEEIKEQ EQNGLEDHKK TKDDQIEENP STKQEKSLSP  300
RTNKPENSFM RPPPSVSVST SVSTSPTTTG INFQNPSGFS LIGSLEMEGI TQYSPKKPRN  360
NQNEGFTLTG SNPTDFMGGL GGYPIGEIGR FTTDQFQQQY SGNGVSLTLG LPHCENISIS  420
GTHQSFLPNQ NIQLGRGAEL GEENDYGAMN PPSSSHSAAM YESMNIQNRK RFAAQPLPDF  480
VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16203261563Homeobox protein Meis2
3k2a_B3e-16203261563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024986166.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-142BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2U1PIJ00.0A0A2U1PIJ0_ARTAN; TALE protein
STRINGEOY084860.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-113BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]