PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan018336 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | TCP | ||||||||
Protein Properties | Length: 195aa MW: 20669.6 Da PI: 6.2904 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 69.7 | 9.3e-22 | 2 | 57 | 29 | 81 |
TCP 29 aarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssss 81 aar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+s+ s Aan018336 2 AARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaaaGAVSHGLS 57 89***********************************9999966633222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 18.616 | 1 | 35 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.7E-15 | 2 | 77 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
XAARIFQLTR ELGHKSDGET IQWLLQQAEP SIIAATGTGT IPASALAAAG AVSHGLSISA 60 GLQHKLDELG SSNNNSNISG ACRTTWPMMT RPISHMANPM WSPTATPVSG FGYQSPSSSS 120 VSNLEIDGSN YLQKIAFSGY DLPGSNMGQM SFSSILGNHD HSQQQQQQQQ QHPGLELGLS 180 QDAHIGVLNQ QALNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021982451.1 | 4e-81 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 3e-37 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2U1MHB8 | 1e-106 | A0A2U1MHB8_ARTAN; TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 | ||||
STRING | XP_007161676.1 | 2e-65 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 8e-33 | TCP family protein |