PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan017468 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | TCP | ||||||||||||
Protein Properties | Length: 136aa MW: 15479.3 Da PI: 10.7733 | ||||||||||||
Description | TCP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.2 | 7.1e-35 | 76 | 136 | 2 | 62 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikel 62 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++ Aan017468 76 APKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAA 136 789********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-28 | 80 | 136 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 82 | 136 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDPKTPNQHH SHSHDQVSRF LTIPHPTTTS NNNLNNNNKN IMGDTNININ NNNNNLKLSE 60 TKEDLTTTKK QQQQLAPKRT SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE 120 TIQWLLQQAE PSIIAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021982451.1 | 6e-46 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 6e-40 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2U1MHB8 | 5e-92 | A0A2U1MHB8_ARTAN; TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 | ||||
STRING | GLYMA16G05840.1 | 8e-45 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-38 | TCP family protein |