PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan014133 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C3H | ||||||||||||
Protein Properties | Length: 146aa MW: 17060.9 Da PI: 5.9498 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.8 | 7.8e-13 | 9 | 34 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Aan014133 9 YQPDICKDYKETGYCGYGDSCKFMHD 34 67789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.23E-10 | 6 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 8 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 8 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-10 | 9 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-13 | 9 | 39 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.6E-14 | 68 | 136 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 4.0E-9 | 85 | 127 | No hit | No description |
SuperFamily | SSF57850 | 1.33E-13 | 85 | 129 | No hit | No description |
CDD | cd00162 | 0.00142 | 86 | 127 | No hit | No description |
PROSITE profile | PS50089 | 10.321 | 86 | 124 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.9E-4 | 86 | 123 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 101 | 110 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
XRVSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQMERDWDE AEKVRKRKLA 60 LKGGDDDDED EEEEIEDDED GLPFACFICR QPFVDPVVTK CKHYFCEHCA LKHHAKKKKC 120 FVCNQPTLGI FNTAHEIRKR TAAEGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 3e-50 | 2 | 145 | 190 | 326 | RING finger protein 113A |
5z58_M | 3e-50 | 2 | 145 | 190 | 326 | RING finger protein 113A |
6ff4_t | 3e-50 | 2 | 145 | 190 | 326 | RING finger protein 113A |
6ff7_t | 3e-50 | 2 | 145 | 190 | 326 | RING finger protein 113A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.3702 | 0.0 | leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609000.1 | 2e-90 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_016502602.1 | 2e-90 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_018628567.1 | 2e-90 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 2e-77 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A2U1P6E8 | 1e-105 | A0A2U1P6E8_ARTAN; Zinc finger CCCH domain-containing protein 1 | ||||
STRING | XP_009609000.1 | 8e-90 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 2e-67 | C3H family protein |