PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan013346

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

TALE

Protein Properties

Length: 358aa MW: 40234.7 Da PI: 7.0459

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-65685	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	3.1e-09	141	178	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Aan013346 141 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 178 664459******************************88 PP
2	BELL	111.8	3.9e-36	3	73	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLl++leeVd++Y+ y++q++ v+ssFeavag g+a++Y slA+ka+SrhFrcL+d i++qi Aan013346 3 FLELQKRKSKLLHMLEEVDRKYHNYCDQMKSVVSSFEAVAGNGAARVYSSLASKAMSRHFRCLRDGIVGQI 73 569******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.9E-12	2	71	IPR006563	POX domain
Pfam	PF07526	1.4E-31	3	69	IPR006563	POX domain
PROSITE profile	PS50071	12.293	119	182	IPR001356	Homeobox domain
SMART	SM00389	7.0E-9	122	186	IPR001356	Homeobox domain
CDD	cd00086	2.91E-11	122	183	No hit	No description
SuperFamily	SSF46689	1.33E-17	123	189	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-28	125	188	IPR009057	Homeodomain-like
Pfam	PF05920	4.0E-18	139	178	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
XEFLELQKRK SKLLHMLEEV DRKYHNYCDQ MKSVVSSFEA VAGNGAARVY SSLASKAMSR 60 HFRCLRDGIV GQIKVTKKAM GEKDISAPGA TRGETPRLRL LDQTLRQQRA FQQMTMLDSQ 120 PWRPQRGLPE RSVSILRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW 180 KPMVEEMYVE ETKDNDQTEG VSDRFNAGVD ENTNVPQMDQ KPTVDQLIRR DSDCLSSIIN 240 HHDHNAAKML DHDMQQSFAR ASGDSFGAVE LDFSAYNHNF GGSSSGGGGG VSLTLGLQQH 300 AERGRGDGSG GSLYYPRDNN MEDSQTSVQY SSLLEGDQGH NLPYRNLMGA QLLHDLAG

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

XEFLELQKRK SKLLHMLEEV DRKYHNYCDQ MKSVVSSFEA VAGNGAARVY SSLASKAMSR  60
HFRCLRDGIV GQIKVTKKAM GEKDISAPGA TRGETPRLRL LDQTLRQQRA FQQMTMLDSQ  120
PWRPQRGLPE RSVSILRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW  180
KPMVEEMYVE ETKDNDQTEG VSDRFNAGVD ENTNVPQMDQ KPTVDQLIRR DSDCLSSIIN  240
HHDHNAAKML DHDMQQSFAR ASGDSFGAVE LDFSAYNHNF GGSSSGGGGG VSLTLGLQQH  300
AERGRGDGSG GSLYYPRDNN MEDSQTSVQY SSLLEGDQGH NLPYRNLMGA QLLHDLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	2e-16	128	186	5	63	Homeobox protein Meis2
4xrm_B	2e-16	128	186	5	63	Homeobox protein Meis2
4xrs_A	2e-16	128	185	1	58	Homeobox protein Meis1
4xrs_B	2e-16	128	185	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021969168.1	0.0	homeobox protein BEL1 homolog
Swissprot	Q38897	1e-120	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A2U1QEA3	0.0	A0A2U1QEA3_ARTAN; TALE protein
STRING	XP_006476516.1	1e-176	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-106	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]