PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan013092

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

SRS

Protein Properties

Length: 124aa MW: 13526.8 Da PI: 9.9835

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-494160996	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	120	3.1e-37	36	112	5	81
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelksk 81 ++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqq l+ +++ ++s+ a ++skr+r ++ Aan013092 36 GVSCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQYLSGGQNDPSHSRrAVSSSKRTRLV-QD 112 679*************************************************99988887776344555555544.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.9E-33	36	112	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.5E-28	38	80	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MGDGSRLINF SDESTWGSAA FVMMGHGGSA SGAGAGVSCQ DCGNQAKKDC PHMRCRTCCK 60 SRGFQCQTHV KSTWVPAAKR RERQQYLSGG QNDPSHSRRA VSSSKRTRLV QDHDQNPNLV 120 RHAX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021982877.1	4e-56	protein SHORT INTERNODES-like
Swissprot	Q9LQZ5	9e-30	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2U1NPD8	5e-83	A0A2U1NPD8_ARTAN; Lateral root primordium protein
STRING	Gorai.002G125600.1	2e-32	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-30	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]