PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan011103 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | NF-YC | ||||||||||||
Protein Properties | Length: 139aa MW: 15863.1 Da PI: 10.0196 | ||||||||||||
Description | NF-YC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.3 | 1.5e-17 | 9 | 98 | 9 | 97 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 q +++t ++P rik+i+k d++++++ +ea l+s+a elf+ l+ +s a e+kr+t+k i av+r + + dfl+d p Aan011103 9 QQQEETTHSTSTFPTGRIKRIIKLDNEINKVNSEALFLISNATELFVKFLAEKSSQVAIEKKRKTIKLEHIRVAVKRHQpTADFLLDSLP 98 455556667889***************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.34E-20 | 14 | 98 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-19 | 20 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.0E-21 | 21 | 98 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MADLEETQQQ QEETTHSTST FPTGRIKRII KLDNEINKVN SEALFLISNA TELFVKFLAE 60 KSSQVAIEKK RKTIKLEHIR VAVKRHQPTA DFLLDSLPVP VPVESKSEQV KKKSDESSKD 120 VPPPPKGSRR IDYFFKKDS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.3117 | 0.0 | leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024990436.1 | 6e-53 | chromatin accessibility complex protein 1 | ||||
TrEMBL | A0A2U1Q620 | 4e-82 | A0A2U1Q620_ARTAN; Histone-fold | ||||
STRING | scaffold_800743.1 | 3e-44 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 2e-38 | nuclear factor Y, subunit C13 |