PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006281

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

WRKY

Protein Properties

Length: 296aa MW: 33334.2 Da PI: 9.739

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-51591	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	229	286	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YYrC+s gCp++k+ver+ +d ++++tYeg+Hnh+ Aan006281 229 DEYSWRKYGQKPIKGSPHPRGYYRCSSMrGCPARKHVERCLDDFGMLIVTYEGDHNHS 286 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF144276	5.49E-5	32	73	No hit	No description
Gene3D	G3DSA:2.20.25.80	1.2E-32	215	286	IPR003657	WRKY domain
PROSITE profile	PS50811	29.482	222	288	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-26	225	286	IPR003657	WRKY domain
SMART	SM00774	2.9E-37	227	287	IPR003657	WRKY domain
Pfam	PF03106	4.7E-26	229	285	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEEVELANKS AVKSFHEIIT LLSQPHDHFH HRKLIDLTSD VVTGFKRVAS LLDDKLSHPR 60 VRKSKNFKTR VPENILLEKD NHSAPNVFKK NISLANQYTS SMQIPQNTPT SFANYQFLQH 120 QQKYQLEQQA KMMYRGSNSG YNLSFDSSGC TPSMSSNRSF VSSLSIEGSV SNISGSSSHL 180 VGSYGQDTYQ HKRRCSARGH DGSSGEDIGX KRSIKVPAIS HKLADIPPDE YSWRKYGQKP 240 IKGSPHPRGY YRCSSMRGCP ARKHVERCLD DFGMLIVTYE GDHNHSLLLP SQSLNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-21	223	287	10	73	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021987406.1	1e-115	probable WRKY transcription factor 21
Swissprot	Q9SR07	6e-78	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A2U1KBN0	0.0	A0A2U1KBN0_ARTAN; Protein WRKY1
STRING	VIT_07s0141g00680.t01	1e-105	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	4e-62	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]