PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006214

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NF-YC

Protein Properties

Length: 301aa MW: 32966.4 Da PI: 4.8911

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55082924	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-241160996	PU_unref	plantGDB	View CDS
PUT-183a-Artemisia_annua-241160997	PU_unref	plantGDB	View CDS
PUT-183a-Artemisia_annua-72264	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.5	3.1e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Aan006214 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.4E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	7.65E-20	3	88	IPR009072	Histone-fold
Pfam	PF00808	2.1E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSEAGVDDR TVTKRKKAAA DEMNDSDEES 120 KRNRMNEAGH TSGSGRGRGR GRGRGRGRPR ASIEHRESLQ IEPESESFTL SFQQGTNQNL 180 SPKGPIDSHL ESIKTETAVN VDPNAGSRDF DLNAGVDENT EKVAATTDGG VASLPPPPPP 240 PQEPQQTVVA PGGSSAAEPS ETEKSEYPGW SASEIDRMAI DPHLAQISSR LDEDDDDYDE 300 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-19	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	139	149	RGRGRGRGRPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024983936.1	1e-134	dr1-associated corepressor homolog
TrEMBL	A0A1B0T706	1e-146	A0A1B0T706_CHRMO; NF-Y protein (Fragment)
STRING	XP_006432367.1	2e-93	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-71	nuclear factor Y, subunit C11