PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006201

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NAC

Protein Properties

Length: 302aa MW: 34858.1 Da PI: 4.9247

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55207429	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-7438	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.4	4.6e-56	11	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL +kv++++++ +i evd++kvePw+Lp ++k +e+ew+fF+ rd+ky+tg+r+nrat++gyWkatgkdke+++ +++lv Aan006201 11 LPPGFRFHPTDEELISYYLYPKVSDTTFTS-LAIGEVDLNKVEPWELPWRAKLGEQEWFFFCVRDRKYPTGSRTNRATDKGYWKATGKDKEIYK-EKSLV 108 79***********************988.67***********888999************************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfykgrapkgektdWvmheyrle Aan006201 109 GMKKTLVFYKGRAPKGEKTDWVMHEYRLE 137 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-60	7	161	IPR003441	NAC domain
PROSITE profile	PS51005	57.46	11	161	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	12	136	IPR003441	NAC domain
Gene3D	G3DSA:1.10.10.60	2.8E-4	17	33	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEHNSDEQID LPPGFRFHPT DEELISYYLY PKVSDTTFTS LAIGEVDLNK VEPWELPWRA 60 KLGEQEWFFF CVRDRKYPTG SRTNRATDKG YWKATGKDKE IYKEKSLVGM KKTLVFYKGR 120 APKGEKTDWV MHEYRLEGIL ATNNLPKSAK GEWVISRVFH KSAGGKKIPI SGLIRMNNGN 180 YYNDDFESAN MPPLMEMSSG EGGSRTEISH VTCFSESMEE QKQENDEMVG SWSSSSYPMA 240 PSMENFQYQD TTWMQDPSIL KILHDPISDS NVRQNPKLEM VDNQDYGMNF SGQADFDCLW 300 NY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	8	167	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	8	167	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	8	167	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	8	167	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	2	167	11	174	NAC domain-containing protein 19
3swm_B	2e-52	2	167	11	174	NAC domain-containing protein 19
3swm_C	2e-52	2	167	11	174	NAC domain-containing protein 19
3swm_D	2e-52	2	167	11	174	NAC domain-containing protein 19
3swp_A	2e-52	2	167	11	174	NAC domain-containing protein 19
3swp_B	2e-52	2	167	11	174	NAC domain-containing protein 19
3swp_C	2e-52	2	167	11	174	NAC domain-containing protein 19
3swp_D	2e-52	2	167	11	174	NAC domain-containing protein 19
4dul_A	1e-52	8	167	14	171	NAC domain-containing protein 19
4dul_B	1e-52	8	167	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745826.1	1e-173	NAC domain-containing protein 92-like
Refseq	XP_023749842.1	1e-173	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-107	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2U1KFI8	0.0	A0A2U1KFI8_ARTAN; No apical meristem (NAM) protein
STRING	XP_009768516.1	1e-122	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-108	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]