PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan003610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 28439.1 Da PI: 8.4814 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 94 | 115 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+++++++ +L H + H Aan003610 94 CSVCSRVYPTSRLLSIHVSEvH 115 99***************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.99 | 65 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 92 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1 | 130 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 132 | 155 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVDNNLQTQT QFKHLFPVIR RFSPDDPFFA SGNIERELLA KQVALDITED EKQQLAYMED 60 ESSDVFCPIV GCGAHLRSLA EFEDHYNARH TACCSVCSRV YPTSRLLSIH VSEVHDSFFQ 120 AKVARGYPMY ECLVEGCGEK LKSYKSRHQH LIDKHSFPSS FEFYKKTRPS KKDRVKKNQR 180 KQHQTTLTRD DEDGSSAMQI EEETLNGLVS AVSKLKTSED STPSAISFGR RHTRGVTFVP 240 RAVQRATKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 175 | KKTRPSKKDRVK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022005572.1 | 1e-151 | zinc finger protein 511 | ||||
TrEMBL | A0A2U1NBY2 | 0.0 | A0A2U1NBY2_ARTAN; Zinc ion binding protein | ||||
STRING | XP_006470078.1 | 1e-120 | (Citrus sinensis) | ||||
STRING | XP_008362107.1 | 1e-120 | (Malus domestica) | ||||
STRING | XP_006447049.1 | 1e-120 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-107 | zinc ion binding;nucleic acid binding;zinc ion binding |