PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan003018

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

WRKY

Protein Properties

Length: 293aa MW: 32332.4 Da PI: 5.9835

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41930654	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-92160995	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.7e-32	148	205	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp++v++tYeg+H h+ Aan003018 148 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSTDPTTVITTYEGQHCHH 205 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-33	132	206	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-28	139	205	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	142	207	IPR003657	WRKY domain
SMART	SM00774	4.6E-37	147	206	IPR003657	WRKY domain
Pfam	PF03106	4.4E-25	148	205	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDDDEKPIDP VTGTYSHDSS SWNDYGLFGI SDSRDNSILS EFGWNIEPEL NRIDSAPKET 60 DASTSEIVVD QAKAGLVENT GDVSMSNPVA SSSESEDRPE SSTVSGEAAS SGKPPTPGTG 120 GKVKKKGPKR IRQQRFAFMT KSEIDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTNSKCTV 180 KKRVERSSTD PTTVITTYEG QHCHHTVGFP RGLISHESAY ARYLAPSSTS QQFSYPRPQF 240 PQVGDLGPSQ SQPQVISSEA ENQPSREQPQ TSFQDARVDQ GLLGDIVPSI MRN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	137	204	7	74	Probable WRKY transcription factor 4
2lex_A	1e-26	137	204	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024991236.1	1e-142	probable WRKY transcription factor 57
TrEMBL	A0A2U1NLE1	0.0	A0A2U1NLE1_ARTAN; DNA-binding WRKY
STRING	XP_009356380.1	2e-83	(Pyrus x bretschneideri)
STRING	POPTR_0008s09360.1	1e-83	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	4e-58	WRKY DNA-binding protein 57