PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan002940

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NF-YC

Protein Properties

Length: 299aa MW: 32794.9 Da PI: 5.1615

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-7614	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.4	6.6e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Aan002940 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLCRGAKTVNSLHLKHCVQSYNVFDFLREVVNK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-25	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.55E-19	3	88	IPR009072	Histone-fold
Pfam	PF00808	9.3E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITLCRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVNKVPDY GHSDAGVDER AMIKRKKAAA DEMNESDEEL 120 KRNRLHEARQ TSTNGRGRGR GRGRGRGRGR ASAEREPPQM EVQLEPCAPL VHPIINQGLN 180 PQGSVDPNLD SLKTLKVEVA GSDGGRDFDL NAGIGENTNK VVDAMDGVAT IQPPTPSPLP 240 QPVPGTGSGG SLVAKDGELK NEDYLGLSLS EMDRMAIDTH NLAQINSRLD EEDEDYDEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	149	RGRGRGRGRGR
2	141	150	RGRGRGRGRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024988286.1	1e-134	dr1-associated corepressor homolog
TrEMBL	A0A2U1M5Y2	0.0	A0A2U1M5Y2_ARTAN; NF-Y protein
STRING	EOY19581	2e-83	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-68	nuclear factor Y, subunit C11