PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK44992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 28256.1 Da PI: 4.1682 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.4 | 6.5e-24 | 6 | 78 | 1 | 72 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk 72 lppGfrFhPtdeelv++yL+++ e+ ++el ++i+++++y+++Pw+Lp+ + +++ ew+fF++rd+ky++g+ KFK44992.1 6 LPPGFRFHPTDEELVSYYLHRRNEKLEIEL-NIIPSIELYNYDPWELPErsFLPNRDMEWFFFCQRDRKYQNGR 78 79****************************.89**************94345566888*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-35 | 4 | 118 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.423 | 6 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-12 | 7 | 94 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAGSSLPPGF RFHPTDEELV SYYLHRRNEK LEIELNIIPS IELYNYDPWE LPERSFLPNR 60 DMEWFFFCQR DRKYQNGRAP FGGRTEWVMH EYRLCDNDSS QGSLNFKGDF ALCRVLKRND 120 LTLKKCETNS PEVLNEPLRN RTEISCQESY QENVSSDTSN NTLWTSPDII LESSFQENSQ 180 PQTEQDSGFQ EFALPEFEYP QEFFADLNFD WEMESPFMFD NYPEAHMNNE VMNYQVFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-26 | 5 | 118 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00175 | DAP | Transfer from AT1G32510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK44992.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415183.1 | 1e-126 | NAC domain-containing protein 71 | ||||
Swissprot | Q9LS24 | 3e-59 | NAC96_ARATH; NAC domain-containing protein 96 | ||||
TrEMBL | A0A087HS90 | 1e-176 | A0A087HS90_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HS90 | 1e-177 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15029 | 17 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32510.1 | 1e-120 | NAC domain containing protein 11 |
Publications ? help Back to Top | |||
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