PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44693.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 311aa    MW: 33780.3 Da    PI: 9.9238
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44693.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.8e-383797262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  KFK44693.1 37 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 97
                67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-334095IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-274195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9014195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPIISSPNTN PLASMQSKNM IIASSHQQQQ PQQPQQPQPQ LKCPRCDSSN TKFCYYNNYS  60
LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY RKNKRVKRPA TTTTASTAST TTSSSPNNSH  120
QISHFSSMNH HPLFYGLSDQ VNNLPMIPSR FSDSSKTSST SGLESEFFSS AGFNGLSALG  180
LGLPHHMSHH DHSFINNSTT NKPFLLSGLF GSSVSTSSST LLQHSHKPMN NGSQMLGQSH  240
LQTLASLQDL HVGGNNDGIN KEGNTNGFMS SSSSSLDPSN YNNIWNNASL VNGAWLDPTN  300
NNVGSSLTSL I
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44693.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2992720.0AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593055.11e-156PREDICTED: dof zinc finger protein DOF1.4-like
RefseqXP_013692400.11e-156dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_013692401.11e-156dof zinc finger protein DOF1.4-like isoform X1
SwissprotQ9FZA41e-138DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A087HRE10.0A0A087HRE1_ARAAL; Uncharacterized protein
STRINGA0A087HRE10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-126Dof family protein