PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44221.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 262aa    MW: 29657.3 Da    PI: 4.3453
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44221.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.91.9e-373793561
      zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                  +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  KFK44221.1 37 VPPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 93
                568**************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.0E-323792IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5283892IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-254092IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKMLPYNGHN SYQHQFPSPE IEIPAKWTLS YGHEETVPPC PRCASSNTKF CYYNNYSLSQ  60
PRYFCKGCRR YWTKGGSLRN IPVGGGCRKR SRSRLNNQKR FGRDDNRPDG ALINQDDGSQ  120
SSPASSDIDL AAVFAQYVTD RSPSSTDNTT GSDQDSPVTT TTTNALDSLS WDICQETDAN  180
LGFYGEFNNL TQKIDEDQQD FGQFLQEDRE EIFEFQGLLD DKEIQEILEC SFSEEPDQLI  240
SQGSFMINGD NWSSTDLTRF GV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306088.21e-169dof zinc finger protein DOF1.2
SwissprotP683491e-166DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLA0A087HQ190.0A0A087HQ19_ARAAL; Uncharacterized protein
STRINGA0A087HQ190.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-169Dof family protein