PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42664.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 305aa    MW: 33065.6 Da    PI: 6.6031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42664.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09158202554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  KFK42664.1 158 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 202
                 99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MANNNNPHDN NLTDQAPCDD FLEQILGISN FSGSSGSGLS GLGGGLTGVS PPPMMLQLGS  60
GEEVNHHMGG GIGGFHNQMF PLGLSLDQGK GHGFLKPDGV LGTSVKRYQD DVVDNRCSSM  120
KPVYHGQPMT QPAPPMPHQQ STIRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV  180
PTVNKTDRAA MIDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDMPLS SSIEDESQAV  240
WEKWSNDGTE RQVAKLMEEN VGAAMQLLQS KALCIMPISL AMAIYHSQPP DTSSSIIKPE  300
MNPPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42664.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418274.11e-175transcription factor bHLH7
SwissprotQ93Y001e-163BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A087HKL20.0A0A087HKL2_ARAAL; Uncharacterized protein
STRINGA0A087HKL20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-153bHLH family protein