PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42486.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 309aa    MW: 35243.8 Da    PI: 6.9643
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42486.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-1548107155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  s+n    k+ ++++lg ++ ++ Aa+a++ a++k++g
  KFK42486.1  48 SSYRGVTRHRWTGRYEAHLWDkNSWNEtqtKKgRQVYLGAYDEEDAAARAYDLAALKYWG 107
                 67*******************888877878557**********99*************98 PP
2AP2544.2e-17150201155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  KFK42486.1 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 201
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-1648116IPR016177DNA-binding domain
PfamPF008475.0E-1248107IPR001471AP2/ERF domain
SMARTSM003801.3E-2649121IPR001471AP2/ERF domain
PROSITE profilePS5103220.50849115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-1649116IPR001471AP2/ERF domain
PRINTSPR003673.4E-65061IPR001471AP2/ERF domain
CDDcd000182.55E-25150211No hitNo description
PfamPF008471.5E-12150201IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-18150211IPR016177DNA-binding domain
SMARTSM003809.7E-26151215IPR001471AP2/ERF domain
PROSITE profilePS5103218.874151209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18151210IPR001471AP2/ERF domain
PRINTSPR003673.4E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAKVSHRSKK TLLDDNEIID KTASASVVLK PKRKRKSLPQ NSPPQRSSSY RGVTRHRWTG  60
RYEAHLWDKN SWNETQTKKG RQVYLGAYDE EDAAARAYDL AALKYWGRDT LLNFPLLNYE  120
EDVKEMEGPS KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAR AYDIAAIEYR GLNAVTNFDV SHYLTLPAPE NSSSVANHEL RSPDDQTSSD  240
DNEFPKTEEV TEPSTSPETI PLRRSFPDDI QTYFGCQDSG KLATEEDAIY GGFNSFINPC  300
FYNEFDYGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036PKRKRKS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650299.11e-176AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotA0JPZ81e-151AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A087HK340.0A0A087HK34_ARAAL; Uncharacterized protein
STRINGA0A087HK340.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-144AP2 family protein