PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42153.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 196aa    MW: 21310.5 Da    PI: 5.9587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42153.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-173888155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr ++ +g+Wv eIr p   ++++r++lg++ tae Aa a++aa ++l+g
  KFK42153.1 38 KKYKGVRMRS-WGSWVTEIRAP---NQKTRIWLGSYSTAEAAAMAYDAALLCLKG 88
                59*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.07E-183897No hitNo description
Gene3DG3DSA:3.30.730.103.6E-293997IPR001471AP2/ERF domain
PfamPF008472.4E-113988IPR001471AP2/ERF domain
SMARTSM003808.3E-3339102IPR001471AP2/ERF domain
PROSITE profilePS5103221.1933996IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-183996IPR016177DNA-binding domain
PRINTSPR003678.8E-94051IPR001471AP2/ERF domain
PRINTSPR003678.8E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVKQEREIQV TTSSSSLSQS STTSSSSSSL HHQSCKNKKY KGVRMRSWGS WVTEIRAPNQ  60
KTRIWLGSYS TAEAAAMAYD AALLCLKGPK ASFNFPNITT TSPFLIDIDE KTLLSPKSIQ  120
KLAAQAANSI SSDPFALPSS SHDDHDHDDG LNHHPSPSSY SAASSLLDDH HNDDDDLVSL  180
MGAFVDEHVS LMDDPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-153896160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390070.14e-73ethylene-responsive transcription factor ERF013
SwissprotQ9CAP43e-62ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLA0A087HJ511e-140A0A087HJ51_ARAAL; Uncharacterized protein (Fragment)
STRINGA0A087HJ511e-141(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.12e-55ERF family protein