PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41887.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 279aa    MW: 31581.7 Da    PI: 6.1544
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41887.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +++++G g+W++ +++ g+ R++k+c++rw++yl
       KFK41887.1 14 KGEWTAEEDRKLAVYINEYGLGDWRSLPKRAGLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding57.82.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
       KFK41887.1  67 RGKFTPQEEEEIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.69961IPR017930Myb domain
SuperFamilySSF466896.7E-3011108IPR009057Homeodomain-like
SMARTSM007174.0E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231568IPR009057Homeodomain-like
CDDcd001671.72E-101661No hitNo description
PROSITE profilePS5129427.05162116IPR017930Myb domain
SMARTSM007179.9E-1766114IPR001005SANT/Myb domain
PfamPF002495.6E-1767111IPR001005SANT/Myb domain
CDDcd001673.33E-1169109No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRTTWTDLD GMKKGEWTAE EDRKLAVYIN EYGLGDWRSL PKRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TPQEEEEIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRNG  120
IDPITHEPMV PMVPMVMTVE VTASSTTSSP TPTPTHSCSS SWTSSSSTGS ARLLNKLATG  180
ISSRKDGLDR IKTMILSELA RQDSVSEPRQ ASVKEDEEVI GCFMDIEKMI STTTSFDQST  240
SFVGFDPNLD YSLSIDPYGL YQSDFFDDET EQLDNMFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390428.11e-123transcription factor MYB106
SwissprotQ9LE633e-61MY106_ARATH; Transcription factor MYB106
TrEMBLA0A087HID50.0A0A087HID5_ARAAL; Uncharacterized protein
STRINGA0A087HID50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-105myb domain protein 95