PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK41738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 24799.1 Da PI: 6.8367 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.3 | 2.5e-38 | 16 | 116 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++r+kC+k+C lapyfp+e++k+f n+hklFG+sn++k++k ++e++r++am+ l+++A+ara dPv G+++++ +l++++++ +ael+l+++ KFK41738.1 16 ACAACKYQRKKCTKNCHLAPYFPQERQKQFLNAHKLFGVSNITKMIKGVEESQRDIAMHNLIFHANARALDPVGGVHKIMCDLKRKIDCCQAELNLVHQ 114 7*************************************************************************************************9 PP DUF260 100 el 101 +l KFK41738.1 115 QL 116 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.916 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-34 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSLSTNHGGS SSSSTACAAC KYQRKKCTKN CHLAPYFPQE RQKQFLNAHK LFGVSNITKM 60 IKGVEESQRD IAMHNLIFHA NARALDPVGG VHKIMCDLKR KIDCCQAELN LVHQQLAMYR 120 SLAQQQQQMQ RQREDLAFGC YSYGDLLEQE DDYVHVDGYD QNVQQHHVMM QQPEQNPLSY 180 EMFLERPDQT NKVKLEKEGI SDPEQDNLMS QILMSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-24 | 10 | 119 | 5 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-24 | 10 | 119 | 5 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK41738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416074.1 | 1e-105 | PREDICTED: LOB domain-containing protein 7-like | ||||
Swissprot | Q9SSM9 | 2e-86 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A087HHY6 | 1e-161 | A0A087HHY6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HHY6 | 1e-162 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 2e-78 | LOB domain-containing protein 7 |