PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41615.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 362aa    MW: 38140.4 Da    PI: 9.3749
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41615.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1263.9e-3951142488
         TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg 88 
                  k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++         +s + s+ ++ss+
  KFK41615.1  51 VKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStlnaslrGGGSTVFSQTSKSSS 142
                 5899***************************************************************8875333333222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3555153IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03155109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEIRTNQTEG GIQLNSPSPG SVPFIGGGAS TTSSSTSTSS GTALAVVKSA VKKPSKDRHT  60
KVDGRGRRIR MPAMCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAST GTGTIPANFS  120
TLNASLRGGG STVFSQTSKS SSSPLSFHGT GMSLYDDSNV ANGSGSSSVA VDPSRKMLNA  180
ANAAVFGFHH QMYPPIMSTD RNVKPYREDY FKESEPSGSS QKVGQFQDQE LGPGRAGNVV  240
PQPMWAVAPG STNGGSAFWM LPMSGSGGRE QMQQQPGHQM WAFNPGNYPV GTGRVVTAPM  300
GSMMLGGQQL GLGVAESNMA AAMRGSRGDG LGMTLDQHQH QHHQQHQEPN QTSENSGGDD  360
KK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532391e-119AK353239.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301977.10.0transcription factor TCP22
SwissprotQ9C7G41e-180TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A087HHL30.0A0A087HHL3_ARAAL; Uncharacterized protein
STRINGA0A087HHL30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-146TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]