PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41539.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 152aa    MW: 17165.7 Da    PI: 10.853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41539.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1972125155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIr     g   k  +r +lg+f taeeAa a+++a+ +l g
  KFK41539.1  72 KKFRGVRQRP-WGKWAAEIRY----GramKGsRRLWLGTFNTAEEAAIAYDNAAIQLIG 125
                 59********.*******999....4456446**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.2E-401150IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.104.7E-2773132IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2073133IPR016177DNA-binding domain
SMARTSM003802.8E-2973139IPR001471AP2/ERF domain
PfamPF008471.6E-1473125IPR001471AP2/ERF domain
PROSITE profilePS5103221.65473133IPR001471AP2/ERF domain
CDDcd000181.05E-2374132No hitNo description
PRINTSPR003674.4E-117485IPR001471AP2/ERF domain
PRINTSPR003674.4E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSS EEESENHTQT RRRGKRLVKE IVIDPDICKT RFKIRIPAEF  60
LKTKTEMKKK KKKFRGVRQR PWGKWAAEIR YGRAMKGSRR LWLGTFNTAE EAAIAYDNAA  120
IQLIGPHAVT NFGIPATENG EVTGESAVAR GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1870134264ATERF1
3gcc_A8e-1870134264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104928.11e-76PREDICTED: ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9956e-72ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A087HHD71e-107A0A087HHD7_ARAAL; Uncharacterized protein
STRINGA0A087HHD71e-108(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]