PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK40911.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

TCP

Protein Properties

Length: 405aa MW: 43226.4 Da PI: 6.8538

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK40911.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.2	4.2e-40	56	198	4	105
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ KFK40911.1 56 TKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsksvplygalgl 154 699****************************************************************99988888888888655557777778888888 PP TCP 89 .................................kaaksaakskksqksaa 105 + +++ +q+ ++ KFK40911.1 155 thhhhqydeqggafgahstpllgfhhhlqqqhhQ------NQNLNQRLTT 198 8877778888888887776666666432222110......2222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-43	59	233	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	60	114	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDLSDVRNND GAAARGGSRQ LIDASLSIVP RSTSLEDAAL TTTSSAATAT TSGVLTKRST 60 KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI 120 PANFSSLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHHHQ YDEQGGAFGA HSTPLLGFHH 180 HLQQQHHQNQ NLNQRLTTNQ LDQAPAETIP GPDGENFSRK RYRSVDLSKE NDDEKQNEDK 240 SFKESETPSA GAAPMWAVAP ATSRPTAGNT YWMLPVQTAA GNQPAAMESS SNTNRAQMWP 300 FVNSAGAGPA TQFMAGPGFS FPMDQYRGSP LQLGSFLAQP QQPTQNLGLS MPDSNLGMLA 360 ALNGGYSRGG NANAEQGNNA VEHKKKQAQQ SDPDDDSREE NSNSS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDLSDVRNND GAAARGGSRQ LIDASLSIVP RSTSLEDAAL TTTSSAATAT TSGVLTKRST  60
KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI  120
PANFSSLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHHHQ YDEQGGAFGA HSTPLLGFHH  180
HLQQQHHQNQ NLNQRLTTNQ LDQAPAETIP GPDGENFSRK RYRSVDLSKE NDDEKQNEDK  240
SFKESETPSA GAAPMWAVAP ATSRPTAGNT YWMLPVQTAA GNQPAAMESS SNTNRAQMWP  300
FVNSAGAGPA TQFMAGPGFS FPMDQYRGSP LQLGSFLAQP QQPTQNLGLS MPDSNLGMLA  360
ALNGGYSRGG NANAEQGNNA VEHKKKQAQQ SDPDDDSREE NSNSS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK40911.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079131	2e-69	AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBank	AC079604	2e-69	AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBank	AY081344	2e-69	AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBank	BT008493	2e-69	BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBank	CP002684	2e-69	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113333.1	0.0	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A087HFK9	0.0	A0A087HFK9_ARAAL; Uncharacterized protein
STRING	A0A087HFK9	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-150	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]