PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK40408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | C3H | ||||||||
Protein Properties | Length: 377aa MW: 43064.8 Da PI: 4.6016 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ KFK40408.1 90 KSILCEFFKA-GQCQKGFKCKFSHD 113 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.7E-5 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 90 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.53 | 160 | 198 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5 | 160 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 1.2E-15 | 218 | 301 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MPPKQQPKAD LAKKQKLVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD AAKTAAKKKK 60 DEEKAREAEL NELFKQAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG 120 EKIDIYSDKR DEDGDMEEWD QETLEKVVES KKNEYSNQNK PTDIVCKYFL DAVEKKQYGW 180 FWACPNGANG CHYRHALPPG YILKSQMKAL LEEESKKMPV EEEIENERAK LKTATQMTPA 240 LFMEWKRKKL AERDAGLAAS QAERAKNDRM SGRELFLSNA SLFVDDAEAF EEYQREKEEE 300 EETDQKAKIK ESEAGTSKSS GDAEQSSKEI DEEEEDDDDD DDDDDDDLDM DELDELEASL 360 SKTSIQIREP NNEGSSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK40408.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006569 | 1e-58 | AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence. | |||
GenBank | CP002685 | 1e-58 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408943.1 | 0.0 | zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q9SK74 | 0.0 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A087HE56 | 0.0 | A0A087HE56_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HE56 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4874 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 0.0 | C3H family protein |